home 2004-08-12

publication list

2004
abstract pdf
John Alan McDonald, and Florence H. Sheehan. Ventriculogram segmentation using boosted decision trees. SPIE/Medical Imaging 2004, Proceedings.
2002
Florence H. Sheehan, Edward L. Bolson, John Alan McDonald, M. Reisman, K.-C. Koch, and A. Poppas. Method for three dimensional data registration from disparate imaging modalities in the NOGA myocardial viability trial. IEEE Trans Med Imag 21: p 1264-1270.
2002
M. Hubka, Edward L. Bolson, John Alan McDonald, R.W. Martin, B. Munt, and Florence H. Sheehan, Three-dimensional echocardiographic measurement of left and right ventricular mass and volume: In vitro validation. Intl J Card Imag 18 p 111-118.
2001
S. Wong, Rich Johnson, John Alan McDonald, and Florence H. Sheehan, Rapid and accurate left ventricular surface generation from three-dimensional echocardiography by a catalog-based method (abstr.). J Am Soc Echocardiogr 14 p 486.
2001
S. Wong, R. French, Edward L. Bolson, John Alan McDonald, M. Legget, and Florence H. Sheehan, Morphology of the rheumatic regurgitant mitral valve by three-dimensional echocardiography. Am Heart J 142 p 897-907.
2000
S. Wong, M. Hubka, John Alan McDonald, Edward L. Bolson, M. Legget, and Florence H. Sheehan, Quantification of left ventricular shape using three-dimensional echocardiography (abstr.). Intl Conference on Heart Failure Vancouver, BC, Canada Jul 1-3 2000.
2000
M. Hubka, B. Hoppe, John Alan McDonald, Edward L. Bolson, K. Coady, Florence H. Sheehan, Shape analysis of the LV surface using three-dimensional echocardiography: Validation and application to LV remodeling following myocardial infarction (abstr.). J Investigat Med
2000
Florence H. Sheehan, John Alan McDonald, and Edward L. Bolson, Anatomically accurate three dimensional reconstruction of the heart. 11th Intl Conf Mechanics Med Biol Maui, HI, April 2-5, 2000.
2000
B. Hoppe, M. Hubka, John Alan McDonald, Edward L. Bolson, K. Coady, Florence H. Sheehan, Three dimensional echocardiographic quantification of left ventricular remodeling after acute myocardial infarction (abstr.). J Am Coll Cardiol/ 35 p 460-A.
2000
pdf
abstract
M. Hubka, S.P. Wong, John Alan McDonald, Edward L. Bolson, K. Coady, Florence H. Sheehan, Shape Analysis Of Left Ventricular Remodeling Following Myocardial Infarction Using Three-Dimensional Echocardiography. Computers in Cardiology 2000 27:127-130
2000
pdf
abstract
Florence H. Sheehan, Edward L. Bolson, John Alan McDonald, Applications Of Three-Dimensional Echocardiography Beyond The Left Ventricle: Other Chambers And Structural Detail. Computers in Cardiology 2000 27:119-122
1999
abstract
Sarah Ratanasopa, Edward L. Bolson, Florence H. Sheehan, John Alan McDonald, and Gerald Bashein, Performance of a Fourier-based program for three-dimensional reconstruction of the mitral annulus on application to sparse, noisy data. The International Journal of Cardiac Imaging 15 (4):301-307 August 1999
1998 Florence H. Sheehan, Edward L. Bolson, Martin RW, Bashein G, John Alan McDonald, Quantitative three dimensional echocardiography: Methodology, validation, and clinical applications. 1st Intl Conf Medical Image Computing and Computer Assisted Interventions (MICCAI98), Cambridge, MA. October 11-13, 1998
1998
pdf
Florence H. Sheehan, Edward L. Bolson, John Alan McDonald, G Bashein, ML Zeppa, RW Martin, Three dimensional echocardiography system for quantitative analysis of the left ventricle. Computers in Cardiology 1998 , p 649-652, Cambridge, MA. October 11-13, 1998
1998
pdf
Malcolm E. Legget, Daniel F. Leotta, Edward L. Bolson, John Alan McDonald, Roy W. Martin, Xiang-Ning Li, Catherine M. Otto, and Florence H. Sheehan. System for quantitative three-dimensional echocardiography of the left ventricle based on a magnetic-field position and orientation sensing system. IEEE Transactions on Biomedical Engineering 45 (4):494-504, April 1998.
1998
abstract PubMed
Malcolm E. Legget, Gerard Bashein, John Alan McDonald, Brad I. Munt, Roy W. Martin, Catherine M. Otto. Three-dimensional measurement of the mitral annulus by multiplane transesophageal echocardiography: in vitro validation and in vivo demonstration. Journal of the American Society of Echocardiography 11 (2):188-200, Feb. 1998.
1997
pdf
Chisheng Huang, John Alan McDonald, and Werner Stuetzle, Variable Resolution Bivariate Plots Journal of Computational and Graphical Statistics 6(4):383-396.
1997
pdf
K. Pulli, Tom Duchamp, Hugues Hoppe, John Alan McDonald, L. Shapiro and Werner Stuetzle, Robust Meshes from Multiple Range Maps Proceedings of International Conference on Recent Advances in 3-D Digital Imaging and Modeling Ottawa, May 12-15.
1997
pdf
K. Pulli, M. Cohen, Tom Duchamp, Hugues Hoppe, John Alan McDonald, L. Shapiro, and Werner Stuetzle. Surface Modeling and Display from Range and Color Data International Conference on Image Analysis and Processing,ICIAP '97, Florence, Italy. (Lecture Notes in Computer Science 1310, Springer-Verlag, Berlin, 1997, pp. 385-397.)
1996
Malcolm E. Legget, Florence H. Sheehan, John Alan McDonald, Hubert Jin, Dan Leotta, Edward L. Bolson, Gerald Bashein, X-N. Li, C.M. Otto, and R. Martin. Anatomically accurate three dimensional (3D) reconstruction of the left ventricle (LV)(abstr.). Circulation 94 (Suppl.I) p. I-211.
1995 Mary Austin-Seymour, Ira Kalet, John Alan McDonald, Sharon Kromhout-Schiro, Jon Jacky, Sharon Hummel, and Jonathan Unger. Three dimensional planning target volumes: a model and software tool. Int. J. Radiation Oncology Biol. Phys., 33 (5): 1073-1080
1995
pdf
Edward L. Bolson, Florence H. Sheehan, Legget ME, Jin H, John Alan McDonald, Sampson PD, Martin RW, Gerald Bashein, Otto CM. Applying the Centersurface model to 3-D reconstructions of the left ventricle for regional function analysis. Computers in Cardiology. Long Beach, CA: IEEE Computer Society, pp. 63-66, 1995
1995 ME Legget, RW Martin, Florence H. Sheehan, G Bashein, Edward L. Bolson, XN Li, John Alan McDonald, Ram Hatangadi, CM Otto. Three dimensional reconstruction using a new dual axis multiplane transesophogeal echo probe: calculation of left ventricular volume. American College of Cardiology 44th Scientific Session: Key Contributions (J Am Coll. Cardiol 25: 17A, 1995)
1995 ME Legget, G Bashein, John Alan McDonald, RW Martin, Florence H. Sheehan, XN Li, Edward L. Bolson, F DeRook, CM Otto. A new method of 3-dimensional reconstruction and quantitation of the mitral valve annulus, valve, and left ventricle: in vitro validation. 6th Annual Scientific Sessions of the American Society of Echocardiography (J Am Soc Echocardiogr 8:343, 1995)
1995 ME Legget, RW Martin, John Alan McDonald, DT Leotta, G Bashein, Florence H. Sheehan, XN Li, Edward L. Bolson, CM Otto. Three dimensional echocardiography of the left ventricle using a magnetic location system: in vitro validation of volume and mass, 6th Annual Scientific Sessions of the American Society of Echocardiography (J Am Soc Echocardiogr 8:386, 1995)
1995
pdf
Hubert Jin, Tom Duchamp, Hugues Hoppe, John Alan McDonald, Kari Pulli, and Werner Stuetzle. Surface reconstruction from misregistered data Proc. of SPIE vol. 2573, pp. 324-8, 1995.
1995
pdf
Martin R W;Legget M; John Alan McDonald; Li X N;Leotta D; Edward L. Bolson; Bashein G;Otto C M; Florence H. Sheehan. Stereographic viewing of 3D ultrasound images: a novelty or a tool? Proceedings of the IEEE Ultrasonics Symposium 2: 1431-1434, 7 Nov 1995
1994
pdf
Hugues Hoppe, Tony DeRose, Tom Duchamp, Mark Halstead, Hubert Jin, John Alan McDonald, Jean Schweitzer, and Werner Stuetzle, Piecewise Smooth Surface Reconstruction Computer Graphics, SIGGRAPH Annual Conference Proceedings 1994.
1993
pdf
Hugues Hoppe, Tony DeRose, Tom Duchamp, John Alan McDonald, and Werner Stuetzle, Mesh Optimization, Computer Graphics 27 (4), (Proceedings SIGGRAPH'93).
1992 Tony DeRose, Tom Duchamp, Hugues Hoppe, John Alan McDonald, and Werner Stuetzle, Fitting of Surfaces to Scattered Data Curves and Surfaces in Computer Vision and Graphics 3, SPIE Proceedings 1830:212-220.
1992
pdf
Hugues Hoppe, Tony DeRose, Tom Duchamp, John Alan McDonald, and Werner Stuetzle, Surface Reconstruction from Unorganized Points Computer Graphics 26 (4), (Proceedings SIGGRAPH'92).
1991
pdf
Andreas Buja, John Alan McDonald, John Michalak, and Werner Stuetzle, Interactive Data Visualization using Focusing and Linking Visualization'91, Oct. 21-25, 1991, San Diego, CA.
1991 Andreas Buja, John Alan McDonald, John Michalak, Werner Stuetzle and Steve Willis. Visualization of Complex Data Visualization'91, (Video Proceedings) Oct. 21-25, 1991, San Diego, CA.
1991 Determining Surface Topology from Unorganized Data, with Hugues Hoppe, Tony DeRose, Tom Duchamp, and Werner Stuetzle, at the Second SIAM Conference on Geometric Design, Nov. 4-8, 1991, Phoenix, AZ.
1991 Fitting a Surface of Known Topology to Unorganized Data, with Werner Stuetzle, Tony DeRose, Tom Duchamp, and Hugues Hoppe, at the Second SIAM Conference on Geometric Design, Nov. 4-8, 1991, Phoenix, AZ.
1991
pdf
John Alan McDonald and Werner Stuetzle, Data Visualization using Focusing and Linking, workshop on Size and Complexity in Information Worlds at CHI'91, April 28-29, 1991, New Orleans, LA.
1991 Tony DeRose, Tom Duchamp, Hugues Hoppe, John Alan McDonald, and Werner Stuetzle, Reconstructing Two-dimensional Manifolds from Scattered Data: Motivation and Background, UW Statistics Tech Rept 215.
1990
pdf
John Alan McDonald, Andreas Buja, and Werner Stuetzle, Painting multiple views of complex objects SIGPLAN Notices 25 (10): 245-257 (OOPSLA/ECOOP'90 Proceedings).
1990
pdf
John Alan McDonald, Geometric Abstractions in Scientific Computing at Computer Science and Statistics, the 22th Symposium on the Interface, East Lansing, Michigan, May.
1990
pdf
John Alan McDonald, John Michalak, Finbarr O'Sullivan, Werner Stuetzle, David Haynor, and Andreas Buja, Graphical tools for quantitative radiology, with , IEEE 1990 Nuclear Science Symposium: Medical Imaging Conference, October 1990.
1990
pdf
Andreas Buja, John Alan McDonald, and Werner Stuetzle, Painting multiple views: an interactive technique for "feeling'' the shape of complex, multidimensional data, with A, Invited Poster Session, CHI'90.
1989
pdf
John Alan McDonald, Object-oriented programming for linear algebra, SIGPLAN Notices 24 (10): 175-184 (OOPSLA'89 Proceedings).
1989
pdf
John Alan McDonald and Jan Pedersen. A case study of statistical computing in a Lisp environment: geometric abstractions for optimization, graph layout, browsing and retrieval in large databases Proc. of the 1989 Joint Statistical Meetings, Stat. Comp. Sect.
1988
pdf
An outline of Arizona: a portable Lisp-based system for data analysis, at Computer Science and Statistics, the 20th Symposium on the Interface, Reston, Va., April.
1988 Analysis of fish abundance in the Bering sea: a case study in the use of graphical methods, with Werner Stuetzle, Proc. of the 1988 Joint Statistical Meetings, Stat. Comp. Sect.
1988 Andreas Buja, Daniel Asimov, Catherine Hurley, and John Alan McDonald, Elements of a viewing pipeline for data analysis, in Dynamic Graphics for Statistics, Cleveland, W.S., and McGill, M.E., eds. (1988) Wadsworth, Pacific Grove, Ca.
1987
pdf
John Alan McDonald and Jan Pedersen. Computing Environments for Data Analysis, Part III: Programming Environments, SIAM J. Scientific and Statistical Computing 9 (2): 380-400.
1987
pdf
John Alan McDonald, Object-oriented design in numerical linear algebra, at Computer Science and Statistics, the 19th Symposium on the Interface, Philadelphia, March.
1987
pdf
John Alan McDonald, Object-oriented design in numerical linear algebra, Tech Rep, UW Dept. of Statistics
1986 John Alan McDonald and Art Owen, Smoothing with Split Linear Fits Technometrics 28 (3): 195-208.
1986 Periodic Smoothing of Time Series, John Alan McDonald SIAM J. Scientific and Statistical Computing 7 (2): 665-688.
1986
pdf
John Alan McDonald, Antelope: data analysis with object-oriented programming and constraints, Proc. of the 1986 Joint Statistical Meetings, Stat. Comp. Sect.
1985 Object oriented programming for graphics and database management Graphical Components for Statistical Workstations, National Computer Graphics Association Annual Meeting, April.
1985 Integrated Programming Environments at the session on Future Statistical Languages at Computer Science and Statistics: Seventeenth Symposium on the Interface, March, 1985.
1985
pdf
John Alan McDonald and Jan Pedersen. Computing Environments for Data Analysis, Part II. Hardware, SIAM J. Scientific and Statistical Computing 6 (4): 1013-1021.
1985
pdf
John Alan McDonald and Jan Pedersen. Computing Environments for Data Analysis, Part I. Introduction, SIAM J. Scientific and Statistical Computing 6(4):1004-1012.
1984 John Alan McDonald, Graphical Methods for Higher Dimensional Data Analysis, at the AAAS Meeting, New York, May, 1984.
1984 John Alan McDonald and Jan Pedersen. Computing Environments for Data Analysis at ASA-IASC-SIAM Conference Frontiers in Computational Statistics in October.
1983
pdf
John Alan McDonald and Jan Pedersen. Graphics Workstations for Data Analysis, Proceedings of 1983 Joint Statistical Meetings, Statistical Computing Section.
1983 John Alan McDonald, Interactive Real Time Graphics for Multivariate Data Analysis, at Computer Science and Statistics: Fifteenth Symposium on the Interface, Houston, Texas, March, 1983.
1982 John Alan McDonald, Jerome H. Friedman, and Werner Stuetzle, Real Time Graphical Techniques for Analyzing Multivariate Data, Proc. of the DOE Statistical Symposium, Idaho Falls, Oct. 13-15.
1982 John Alan McDonald, Jerome H. Friedman, and Werner Stuetzle, An Introduction to Real Time Graphical Techniques for Analyzing Multivariate Data, Proceedings of the Third Annual Conference and Exposition of the National Computer Graphics Association, Inc., Volume I. (also in Dynamic Graphics for Statistics, Cleveland, W.S., and McGill, M.E., eds. (1988) Wadsworth, Pacific Grove, Ca.)
1982
pdf
John Alan McDonald, Interactive Graphics for Data Analysis, (Ph.D. Thesis), Available as Tech. Report Orion\# 11, Dept. of Statistics, Stanford.. Also in Dynamic Graphics for Statistics, Cleveland, W.S., and McGill, M.E., eds. (1988) Wadsworth, Pacific Grove, Ca.
1982 John Alan McDonald, Projection Pursuit Regression with the Orion I Workstation, a 20 minute, 16mm color sound film, which demonstrates parts of my thesis work. It is available for loan from: Jerome H. Friedman, Computation Research Group, Bin \# 88, SLAC, P.O. Box 4349, Stanford, Ca. 94305
1982 John Alan McDonald, Exploring Data with the Orion I Workstation, a 25 minute, 16mm sound film, which demonstrates parts of my thesis work. It is available for loan from: Jerome H. Friedman, Computation Research Group, Bin \# 88, SLAC, P.O. Box 4349, Stanford, Ca. 94305
1982 John Alan McDonald, Real Time Graphical Techniques for Analyzing Multivariate Data, at the DOE Statistical Symposium, Idaho Falls, Idaho, November, 1982.
1982 John Alan McDonald, Real Time Graphical Techniques for Analyzing Multivariate Data, at the Joint Statistical Meetings, Cincinnati, Ohio, August, 1982.
1982 John Alan McDonald, Exploring Data with the Orion I workstation at the Stanford Workshop on Advanced Statistical Graphics, Stanford, Ca., July, 1982.
1982 John Alan McDonald, Projection Pursuit Regression with the Orion I workstation at the Stanford Workshop on Advanced Statistical Graphics, Stanford, Ca., July, 1982.
1982 John Alan McDonald, An Introduction to Real Time Graphical Techniques for Analyzing Multivariate Data, at Third Annual Conference and Exposition of the National Computer Graphics Association, Anaheim, California, June, 1982.
1977 John Alan McDonald, Dynamics of Nuclear Fluid III: General Considerations on the Kinetic Theory of Quantum Fluids John Alan McDonald and C.Y.Wong, Physical Review C 16(3):1196-1215.
1975 John Alan McDonald, Scattering Representations of Weyl Algebras and the Infrared Paradox Senior Thesis, Physics Dept., Princeton. Advisor: Jurg Frolich.
1974 John Alan McDonald, Causal Structure of Non-time Orientable Spacetimes Junior Paper, Physics Dept., Princeton. Advisor: Robert Geroch.
1973 John Alan McDonald, The Cauchy Initial Value Problem in General Relativity. Junior Paper, Physics Dept., Princeton. Advisor: John A. Wheeler.

home 2004-05-09